The entropy of the world in the far past appears very low to us. But this might not reflect the exact state of the world: it might regard the subset of the world' s variables with which we, as physical systems, have interacted. It is with respect to the dramatic blurring produced by our interactions with the world, caused by the small set of macroscopic variables in terms of which we describe the world, that the entropy of the universe was low.
Our moral values, our emotions, our loves are no less real for being part of nature, for being shared with the animal world, or fore being determined by the evolution that our species has undergone over millions of years. Rather, they are more valuable as a result of this: they are real.